PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G007000.2
Common NameB456_001G007000, LOC105787024
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 371aa    MW: 40371.9 Da    PI: 7.5001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G007000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000492282661255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.001G007000.2 228 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 266
                         6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-10226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-6226270No hitNo description
Gene3DG3DSA:4.10.280.103.3E-7230272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNQGVLQSSP VQQLMAGNPD WWSINNAMRP PSTHHHHHHQ QTASPFFPFP PPQPPPPPAA  60
AAAAATFFPQ LIPTSTSSSS SWHDNNNQEV PEPWSQLLLG GLVGEEQATA LQHQASTGNN  120
NIMKQENYVY GHANEDYHHH HHHHYQGSKA TTNWSMATAS SSPKSCVTTS FNNNMLDFSS  180
NIKVDTATRQ HPPLMDPSPE CNSSTASGGA LKKTRVQPSA TQSTFKVRKE KLGDRITALH  240
QLVSPFGKTD TASVLLEAIG YIRFLQSQIE ALSLPYLGSD GSSGNMRQQQ QSVQGERNCI  300
FPEDPGQLLN EKCMKKRKGG PADLQDSNEE PKKNLKSRGL CLVPISCTLQ VGSDNGADYW  360
APPSLGGGFR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272611e-159HQ527261.1 Gossypium herbaceum clone NBRI_D_4733 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468959.10.0PREDICTED: transcription factor bHLH68-like isoform X1
SwissprotQ8S3D12e-90BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2LT020.0A0A0D2LT02_G
STRINGVIT_11s0016g03560.t011e-137(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.17e-81bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]